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Pantoprazole is a medication used to treat certain stomach and esophageal problems (such as acid reflux). It works by reducing the amount of acid produced by your stomach. This medication relieves symptoms such as heartburn, swallowing difficulties, and coughing. It aids in the healing of acid damage to the stomach and esophagus, the prevention of ulcers, and the prevention of esophageal cancer. Pantoprazole is a proton pump inhibitor, which is a type of medication (PPI).